8 Session information
## R version 4.5.1 (2025-06-13)
## Platform: aarch64-apple-darwin20
## Running under: macOS Sequoia 15.5
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.1
##
## locale:
## [1] C/UTF-8/C/C/C/C
##
## time zone: Asia/Shanghai
## tzcode source: internal
##
## attached base packages:
## [1] stats4 grid stats graphics grDevices utils datasets
## [8] methods base
##
## other attached packages:
## [1] export_0.3.0 openxlsx_4.2.8 drc_3.0-1
## [4] MASS_7.3-65 circlize_0.4.16 ComplexHeatmap_2.24.1
## [7] plyr_1.8.9 GOplot_1.0.2 gridExtra_2.3
## [10] ggdendro_0.2.0 forestploter_1.1.3 WGCNA_1.73
## [13] fastcluster_1.3.0 dynamicTreeCut_1.63-1 BiocParallel_1.42.1
## [16] GSEABase_1.70.0 graph_1.86.0 annotate_1.86.1
## [19] XML_3.99-0.18 GSVA_2.2.0 msigdbr_25.1.0
## [22] limma_3.64.1 org.Hs.eg.db_3.21.0 AnnotationDbi_1.70.0
## [25] IRanges_2.42.0 S4Vectors_0.46.0 Biobase_2.68.0
## [28] BiocGenerics_0.54.0 generics_0.1.4 clusterProfiler_4.16.0
## [31] pheatmap_1.0.13 survminer_0.5.0 survival_3.8-3
## [34] colorRamp2_0.1.0 SNFtool_2.3.1 ggrepel_0.9.6
## [37] reshape2_1.4.4 ggpubr_0.6.1 ggunchained_0.0.1
## [40] devtools_2.4.5 usethis_3.1.0 RColorBrewer_1.1-3
## [43] umap_0.2.10.0 vioplot_0.5.1 zoo_1.8-14
## [46] sm_2.2-6.0 corrplot_0.95 readxl_1.4.5
## [49] VennDiagram_1.7.3 futile.logger_1.4.3 lubridate_1.9.4
## [52] forcats_1.0.0 stringr_1.5.1 dplyr_1.1.4
## [55] purrr_1.0.4 readr_2.1.5 tidyr_1.3.1
## [58] tibble_3.3.0 ggplot2_3.5.2 tidyverse_2.0.0
##
## loaded via a namespace (and not attached):
## [1] SpatialExperiment_1.18.1 R.methodsS3_1.8.2
## [3] dichromat_2.0-0.1 prettyGraphs_2.2.0
## [5] urlchecker_1.0.1 nnet_7.3-20
## [7] Biostrings_2.76.0 HDF5Array_1.36.0
## [9] TH.data_1.1-3 vctrs_0.6.5
## [11] ggtangle_0.0.7 digest_0.6.37
## [13] png_0.1-8 shape_1.4.6.1
## [15] magick_2.8.7 fontLiberation_0.1.0
## [17] httpuv_1.6.16 foreach_1.5.2
## [19] qvalue_2.40.0 withr_3.0.2
## [21] xfun_0.52 ggfun_0.1.9
## [23] ellipsis_0.3.2 memoise_2.0.1
## [25] gson_0.1.0 profvis_0.4.0
## [27] systemfonts_1.2.3 ragg_1.4.0
## [29] tidytree_0.4.6 GlobalOptions_0.1.2
## [31] gtools_3.9.5 R.oo_1.27.1
## [33] Formula_1.2-5 KEGGREST_1.48.1
## [35] promises_1.3.3 httr_1.4.7
## [37] rstatix_0.7.2 rhdf5filters_1.20.0
## [39] rhdf5_2.52.1 rstudioapi_0.17.1
## [41] UCSC.utils_1.4.0 miniUI_0.1.2
## [43] DOSE_4.2.0 base64enc_0.1-3
## [45] babelgene_22.9 curl_6.4.0
## [47] ScaledMatrix_1.16.0 h5mread_1.0.1
## [49] GenomeInfoDbData_1.2.14 SparseArray_1.8.0
## [51] xtable_1.8-4 doParallel_1.0.17
## [53] evaluate_1.0.4 S4Arrays_1.8.1
## [55] preprocessCore_1.70.0 hms_1.1.3
## [57] GenomicRanges_1.60.0 bookdown_0.43
## [59] irlba_2.3.5.1 colorspace_2.1-1
## [61] reticulate_1.42.0 magrittr_2.0.3
## [63] later_1.4.2 ggtree_3.16.0
## [65] lattice_0.22-7 cowplot_1.1.3
## [67] matrixStats_1.5.0 Hmisc_5.2-3
## [69] pillar_1.11.0 nlme_3.1-168
## [71] iterators_1.0.14 compiler_4.5.1
## [73] beachmat_2.24.0 RSpectra_0.16-2
## [75] stringi_1.8.7 SummarizedExperiment_1.38.1
## [77] crayon_1.5.3 abind_1.4-8
## [79] gridGraphics_0.5-1 bit_4.6.0
## [81] sandwich_3.1-1 fastmatch_1.1-6
## [83] textshaping_1.0.1 codetools_0.2-20
## [85] multcomp_1.4-28 BiocSingular_1.24.0
## [87] openssl_2.3.3 flextable_0.9.9
## [89] bslib_0.9.0 GetoptLong_1.0.5
## [91] mime_0.13 splines_4.5.1
## [93] Rcpp_1.1.0 sparseMatrixStats_1.20.0
## [95] cellranger_1.1.0 Rttf2pt1_1.3.12
## [97] knitr_1.50 blob_1.2.4
## [99] clue_0.3-66 fs_1.6.6
## [101] checkmate_2.3.2 pkgbuild_1.4.8
## [103] ggsignif_0.6.4 ggplotify_0.1.2
## [105] Matrix_1.7-3 statmod_1.5.0
## [107] tzdb_0.5.0 pkgconfig_2.0.3
## [109] tools_4.5.1 cachem_1.1.0
## [111] stargazer_5.2.3 RSQLite_2.4.1
## [113] DBI_1.2.3 impute_1.82.0
## [115] fastmap_1.2.0 rmarkdown_2.29
## [117] scales_1.4.0 officer_0.6.10
## [119] broom_1.0.8 sass_0.4.10
## [121] patchwork_1.3.1 carData_3.0-5
## [123] rpart_4.1.24 farver_2.1.2
## [125] ExPosition_2.11.0 yaml_2.3.10
## [127] MatrixGenerics_1.20.0 foreign_0.8-90
## [129] ggthemes_5.1.0 cli_3.6.5
## [131] lifecycle_1.0.4 askpass_1.2.1
## [133] mvtnorm_1.3-3 lambda.r_1.2.4
## [135] sessioninfo_1.2.3 backports_1.5.0
## [137] timechange_0.3.0 gtable_0.3.6
## [139] rjson_0.2.23 devEMF_4.5-1
## [141] parallel_4.5.1 ape_5.8-1
## [143] jsonlite_2.0.0 bit64_4.6.0-1
## [145] assertthat_0.2.1 yulab.utils_0.2.0
## [147] zip_2.3.3 futile.options_1.0.1
## [149] jquerylib_0.1.4 GOSemSim_2.34.0
## [151] survMisc_0.5.6 R.utils_2.13.0
## [153] lazyeval_0.2.2 rgl_1.3.24
## [155] shiny_1.11.1 htmltools_0.5.8.1
## [157] enrichplot_1.28.2 rvg_0.3.5
## [159] KMsurv_0.1-6 GO.db_3.21.0
## [161] alluvial_0.1-2 formatR_1.14
## [163] glue_1.8.0 XVector_0.48.0
## [165] gdtools_0.4.2 treeio_1.32.0
## [167] extrafontdb_1.0 igraph_2.1.4
## [169] R6_2.6.1 SingleCellExperiment_1.30.1
## [171] km.ci_0.5-6 cluster_2.1.8.1
## [173] pkgload_1.4.0 Rhdf5lib_1.30.0
## [175] aplot_0.2.8 GenomeInfoDb_1.44.0
## [177] plotrix_3.8-4 DelayedArray_0.34.1
## [179] tidyselect_1.2.1 htmlTable_2.4.3
## [181] xml2_1.3.8 fontBitstreamVera_0.1.1
## [183] car_3.1-3 rsvd_1.0.5
## [185] fontquiver_0.2.1 data.table_1.17.6
## [187] htmlwidgets_1.6.4 fgsea_1.34.0
## [189] rlang_1.1.6 extrafont_0.19
## [191] uuid_1.2-1 remotes_2.5.0