6 Session Information
## R version 4.4.2 (2024-10-31)
## Platform: aarch64-apple-darwin20
## Running under: macOS Sequoia 15.3
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.0
##
## locale:
## [1] C/UTF-8/C/C/C/C
##
## time zone: Asia/Shanghai
## tzcode source: internal
##
## attached base packages:
## [1] stats4 grid stats graphics grDevices utils datasets
## [8] methods base
##
## other attached packages:
## [1] maSigPro_1.76.0 igraph_2.1.4 SNFtool_2.3.1
## [4] Hmisc_5.2-2 survminer_0.5.0 survival_3.8-3
## [7] GSVA_1.52.3 scatterplot3d_0.3-44 cowplot_1.1.3
## [10] metid_1.2.35 metpath_1.0.8 mixOmics_6.28.0
## [13] lattice_0.22-6 MASS_7.3-64 massstat_1.0.6
## [16] ggfortify_0.4.17 massqc_1.0.7 masscleaner_1.0.12
## [19] MSnbase_2.30.1 ProtGenerics_1.36.0 S4Vectors_0.42.1
## [22] Biobase_2.64.0 BiocGenerics_0.50.0 mzR_2.38.0
## [25] Rcpp_1.0.14 xcms_4.2.3 BiocParallel_1.38.0
## [28] massprocesser_1.0.11 magrittr_2.0.3 masstools_1.0.13
## [31] massdataset_1.0.34 tidymass_1.0.9 UpSetR_1.4.0
## [34] ggraph_2.2.1 supraHex_1.42.1 hexbin_1.28.5
## [37] ggpubr_0.6.0 MNet_1.1.0 ggrepel_0.9.6
## [40] openxlsx_4.2.8 ComplexHeatmap_2.20.0 VennDiagram_1.7.3
## [43] futile.logger_1.4.3 lubridate_1.9.4 forcats_1.0.0
## [46] stringr_1.5.1 dplyr_1.1.4 purrr_1.0.2
## [49] readr_2.1.5 tidyr_1.3.1 tibble_3.2.1
## [52] ggplot2_3.5.1 tidyverse_2.0.0
##
## loaded via a namespace (and not attached):
## [1] graph_1.82.0 plotly_4.10.4
## [3] Formula_1.2-5 zlibbioc_1.50.0
## [5] tidyselect_1.2.1 bit_4.5.0.1
## [7] doParallel_1.0.17 clue_0.3-66
## [9] rjson_0.2.23 blob_1.2.4
## [11] rngtools_1.5.2 S4Arrays_1.4.1
## [13] parallel_4.4.2 caret_7.0-1
## [15] png_0.1-8 cli_3.6.3
## [17] MetaboCoreUtils_1.12.0 MultiAssayExperiment_1.30.3
## [19] qqman_0.1.9 curl_6.2.0
## [21] mime_0.12 evaluate_1.0.3
## [23] stringi_1.8.4 pROC_1.18.5
## [25] backports_1.5.0 robust_0.7-5
## [27] XML_3.99-0.18 httpuv_1.6.15
## [29] AnnotationDbi_1.66.0 prettyGraphs_2.1.6
## [31] splines_4.4.2 MsCoreUtils_1.16.1
## [33] mclust_6.1.1 prodlim_2024.06.25
## [35] KMsurv_0.1-5 doRNG_1.8.6.1
## [37] pcaPP_2.0-5 org.Hs.eg.db_3.19.1
## [39] venn_1.12 DBI_1.2.3
## [41] HDF5Array_1.32.1 jquerylib_0.1.4
## [43] withr_3.0.2 corpcor_1.6.10
## [45] class_7.3-23 xgboost_1.7.8.1
## [47] GSEABase_1.66.0 tidygraph_1.3.1
## [49] formatR_1.14 BiocManager_1.30.25
## [51] htmlwidgets_1.6.4 fs_1.6.5
## [53] SingleCellExperiment_1.26.0 MassSpecWavelet_1.70.0
## [55] SparseArray_1.4.8 cellranger_1.1.0
## [57] DEoptimR_1.1-3-1 MatrixGenerics_1.16.0
## [59] ropls_1.36.0 annotate_1.82.0
## [61] zoo_1.8-12 Boruta_8.0.0
## [63] XVector_0.44.0 knitr_1.49
## [65] itertools_0.1-3 UCSC.utils_1.0.0
## [67] timechange_0.3.0 foreach_1.5.2
## [69] patchwork_1.3.0 MsExperiment_1.6.0
## [71] data.table_1.16.4 timeDate_4041.110
## [73] rhdf5_2.48.0 calibrate_1.7.7
## [75] RSpectra_0.16-2 irlba_2.3.5.1
## [77] fastDummies_1.7.5 lazyeval_0.2.2
## [79] yaml_2.3.10 SpatialExperiment_1.14.0
## [81] crayon_1.5.3 RColorBrewer_1.1-3
## [83] tweenr_2.0.3 later_1.4.1
## [85] Rgraphviz_2.48.0 codetools_0.2-20
## [87] base64enc_0.1-3 GlobalOptions_0.1.2
## [89] KEGGREST_1.44.1 shape_1.4.6.1
## [91] limma_3.60.6 QFeatures_1.14.2
## [93] foreign_0.8-88 pkgconfig_2.0.3
## [95] KEGGgraph_1.64.0 GenomicRanges_1.56.2
## [97] IRanges_2.38.1 ape_5.8-1
## [99] viridisLite_0.4.2 xtable_1.8-4
## [101] rrcov_1.7-6 car_3.1-3
## [103] plyr_1.8.9 httr_1.4.7
## [105] tools_4.4.2 globals_0.16.3
## [107] hardhat_1.4.0 mzID_1.42.0
## [109] htmlTable_2.4.3 broom_1.0.7
## [111] checkmate_2.3.2 nlme_3.1-167
## [113] pathview_1.44.0 Spectra_1.14.1
## [115] affy_1.82.0 lambda.r_1.2.4
## [117] survMisc_0.5.6 digest_0.6.37
## [119] bookdown_0.42 PSMatch_1.8.0
## [121] Matrix_1.7-2 furrr_0.3.1
## [123] farver_2.1.2 tzdb_0.4.0
## [125] AnnotationFilter_1.28.0 reshape2_1.4.4
## [127] ModelMetrics_1.2.2.2 viridis_0.6.5
## [129] rpart_4.1.24 glue_1.8.0
## [131] cachem_1.1.0 polyclip_1.10-7
## [133] generics_0.1.3 Biostrings_2.72.1
## [135] mvtnorm_1.3-3 parallelly_1.41.0
## [137] fit.models_0.64 statmod_1.5.0
## [139] impute_1.78.0 ScaledMatrix_1.12.0
## [141] carData_3.0-5 pbapply_1.7-2
## [143] SummarizedExperiment_1.34.0 dnet_1.1.7
## [145] gower_1.0.2 graphlayouts_1.2.2
## [147] readxl_1.4.3 preprocessCore_1.66.0
## [149] ggsignif_0.6.4 affyio_1.74.0
## [151] gridExtra_2.3 shiny_1.10.0
## [153] lava_1.8.1 GenomeInfoDbData_1.2.12
## [155] rhdf5filters_1.16.0 RCurl_1.98-1.16
## [157] memoise_2.0.1 rmarkdown_2.29
## [159] pheatmap_1.0.12 scales_1.3.0
## [161] MultiDataSet_1.32.0 future_1.34.0
## [163] km.ci_0.5-6 rstudioapi_0.17.1
## [165] cluster_2.1.8 hms_1.1.3
## [167] munsell_0.5.1 ggcorrplot_0.1.4.1
## [169] colorspace_2.1-1 ellipse_0.5.0
## [171] rlang_1.1.5 GenomeInfoDb_1.40.1
## [173] sparseMatrixStats_1.16.0 xts_0.14.1
## [175] ipred_0.9-15 quantmod_0.4.26
## [177] ggforce_0.4.2 circlize_0.4.16
## [179] xfun_0.50 e1071_1.7-16
## [181] remotes_2.5.0 MsFeatures_1.12.0
## [183] recipes_1.1.0 iterators_1.0.14
## [185] matrixStats_1.5.0 rARPACK_0.11-0
## [187] abind_1.4-8 randomForest_4.7-1.2
## [189] Rhdf5lib_1.26.0 futile.options_1.0.1
## [191] bitops_1.0-9 promises_1.3.2
## [193] MALDIquant_1.22.3 RSQLite_2.3.9
## [195] ExPosition_2.8.23 fgsea_1.30.0
## [197] DelayedArray_0.30.1 proxy_0.4-27
## [199] compiler_4.4.2 admisc_0.37
## [201] filesstrings_3.4.0 prettyunits_1.2.0
## [203] beachmat_2.20.0 listenv_0.9.1
## [205] vsn_3.72.0 BiocSingular_1.20.0
## [207] progress_1.2.3 missForest_1.5
## [209] R6_2.5.1 fastmap_1.2.0
## [211] fastmatch_1.1-6 rstatix_0.7.2
## [213] TTR_0.24.4 rsvd_1.0.5
## [215] nnet_7.3-20 gtable_0.3.6
## [217] strex_2.0.1 htmltools_0.5.8.1
## [219] bit64_4.6.0-1 lifecycle_1.0.4
## [221] zip_2.3.1 DMwR2_0.0.2
## [223] sass_0.4.9 vctrs_0.6.5
## [225] ncdf4_1.23 robustbase_0.99-4-1
## [227] future.apply_1.11.3 bslib_0.8.0
## [229] pillar_1.10.1 pcaMethods_1.96.0
## [231] magick_2.8.5 alluvial_0.1-2
## [233] jsonlite_1.8.9 GetoptLong_1.0.5