Input into eV2CG

Completed at Sat Apr 30 00:00:52 2022 (Asia/Shanghai), with the runtime of 70 seconds on the server side (not including the runtime on the client/user side).

An interactive table of user-input SNPs, with 1st column SNPs for dbSNP rsIDs, 2nd column P-values for significance info.

Output: core genes

Manhattan plot illustrates scored core genes color-coded by chromosomes, with the top 30 genes labelled. Also provided is an editable PDF file for download.

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Manhattan plot illustrating scores (y-axis) for core genes (color-coded by chromosomes; x-axis), with the top scored genes labelled.

Figure 1: Manhattan plot illustrating scores (y-axis) for core genes (color-coded by chromosomes; x-axis), with the top scored genes labelled.

An interactive table of core genes linked from the input SNPs, with the column Scores quantifying the degree of genes responsible for genetic associations (capped at 100). Core genes are cross-referenced and hyperlinked to GeneCards. Also provided is the column Evidence used to define core genes; please refer to Evidence table for details.

Evidence table for core genes, showing which SNPs (see the column SNPs) are used to define core genes (the column Core genes) based on which evidence (see the column Evidence). The column SNP type tells the SNP type (either Input for use-input SNPs or LD for LD SNPs). Notably, the column Evidence details datasets used: the prefix Proximity_ indicative of SNPs in the proximity, the prefix PCHiC_ for PCHi-C datasets, and the prefix QTL_ for e/pQTL datasets.